View on github resource page go back to home reference. Genome analysis toolkit 4 gatk4 released as open source resource to accelerate research. Genome analysis toolkit 4 gatk4 released as open source. For more details, see the userfriendly version highlights. If you are planning on running some of the gatk workflows locally you will require various reference files, known as the resource bundle.
The gatk is one of the most widely utilized software packages in. Click on a link below to see the available databases. The gatk resource bundle is a collection of standard files for working with human resequencing data with the gatk. Gatk baserecalibrator knownsites where to download for. We provide several versions of the bundle corresponding to the various reference builds, but be aware that we no longer support very old versions b36hg18.
A set of centrallymaintained and updated scientific databases is made available to users of helix and biowulf. Gatk baserecalibrator knownsites where to download for vcf for human exome sequencing analysis. Its powerful processing engine and highperformance computing features make it capable of taking on projects of any size. Gatk resource bundle standard data set for working with gatk back to main database page. Introduction to the genome analysis toolkit gatk i. From the uscs genome browser, if you click on human full data set, and then scroll down, you will see many links for zipped files that end in fa. We provide several versions of the bundle corresponding to the various reference builds, but be aware that we no longer actively support very old versions b36hg18. The gatk resource bundle is a collection of standard files for working with human sequencing data. The bundles are available on the gatk public ftp server. Other than the gatk resource bundle, available via ftp, we can download reference genomes from either ensemble or the ucsc genome browser. Developed in the data sciences platform at the broad institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping.
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